Development

Generate React component documentation for SEED Design System. Use when creating new React component docs in ./docs/content/react/components or updating existing implementation documentation. Helps document component APIs, props, installation, and usage examples.

Small Python utilities for math and text files.

Guide Claude through omicverse's bulk RNA-seq DEG pipeline, from gene ID mapping and DESeq2 normalization to statistical testing, visualization, and pathway enrichment. Use when a user has bulk count matrices and needs differential expression analysis in omicverse.

Use omicverse's pyComBat wrapper to remove batch effects from merged bulk RNA-seq or microarray cohorts, export corrected matrices, and benchmark pre/post correction visualisations.

Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.

Creates user-specific one-click action templates that execute email operations when clicked in the chat interface. Use when user wants reusable actions for their specific workflows (send payment reminder to ACME Corp, forward bugs to engineering, archive old newsletters from specific sources).

Walk Claude through PyDESeq2-based differential expression, including ID mapping, DE testing, fold-change thresholding, and enrichment visualisation.

Map scRNA-seq atlases onto spatial transcriptomics slides using omicverse's Single2Spatial workflow for deep-forest training, spot-level assessment, and marker visualisation.

Assist Claude in running PyWGCNA through omicverse—preprocessing expression matrices, constructing co-expression modules, visualising eigengenes, and extracting hub genes.

Run omicverse's CellPhoneDB v5 wrapper on annotated single-cell data to infer ligand-receptor networks and produce CellChat-style visualisations.

Expert Java developer skill for AgentScope Java framework - a reactive, message-driven multi-agent system built on Project Reactor. Use when working with reactive programming, LLM integration, agent orchestration, multi-agent systems, or when the user mentions AgentScope, ReActAgent, Mono/Flux, Project Reactor, or Java agent development. Specializes in non-blocking code, tool integration, hooks, pipelines, and production-ready agent applications.

Use when creating git commits to ensure commit messages follow project standards. Applies the 7 rules for great commit messages with focus on conciseness and imperative mood.

Generate comprehensive, accurate API documentation from source code. Use when creating or updating API documentation, generating OpenAPI specs, or when users mention API docs, endpoints, or documentation.

Comprehensive code review with security, performance, and quality analysis. Use when users ask to review code, analyze code quality, evaluate pull requests, or mention code review, security analysis, or performance optimization.

Apply systematic performance optimization techniques for Python and Rust code: estimation + profiling, API/bulk design, algorithmic wins, cache-friendly memory layout, fewer allocations, fast paths, caching, and compiler-friendly hot loops. Use for performance code reviews, refactors, and profiling-driven optimizations. Keywords: performance, latency, throughput, cache, allocation, memory layout, PyO3, msgspec, tokio, async, pprof, py-spy, perf.

Execute inspect and validate Vertex AI Agent Engine deployments including Code Execution Sandbox, Memory Bank, A2A protocol compliance, and security posture. Generates production readiness scores. Use when asked to "inspect agent engine" or "validate depl... Trigger with relevant phrases based on skill purpose.

Implement Real User Monitoring (RUM) to capture actual user performance data including Core Web Vitals and page load times. Use when setting up user experience monitoring or tracking custom performance events. Trigger with phrases like "setup RUM", "track Core Web Vitals", or "monitor real user performance".

Use when you need to work with deployment and CI/CD.This skill provides deployment automation and orchestration with comprehensive guidance and automation.Trigger with phrases like "deploy application", "create pipeline",or "automate deployment".

Create webhook endpoints with signature verification, retry logic, and payload validation.Use when receiving and processing webhook events.Trigger with phrases like "create webhook", "handle webhook events", or "setup webhook handler".

Detect and analyze SQL injection vulnerabilities in application code and database queries.Use when you need to scan code for SQL injection risks, review query construction, validate input sanitization, or implement secure query patterns.Trigger with phrases like "detect SQL injection", "scan for SQLi vulnerabilities", "review database queries", or "check SQL security".