Deep Learning

This skill should be used when the user asks to "understand context", "explain context windows", "design agent architecture", "debug context issues", "optimize context usage", or discusses context components, attention mechanics, progressive disclosure, or context budgeting. Provides foundational understanding of context engineering for AI agent systems.

This skill should be used when the user asks to "diagnose context problems", "fix lost-in-middle issues", "debug agent failures", "understand context poisoning", or mentions context degradation, attention patterns, context clash, context confusion, or agent performance degradation. Provides patterns for recognizing and mitigating context failures.

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).

Create publication-quality scientific diagrams using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.

This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.

Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.

High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel training, vectorized environments, multi-agent systems, or integration with game environments (Atari, Procgen, NetHack). Achieves 2-10x speedups over standard implementations. For quick prototyping or standard algorithm implementations with extensive documentation, use stable-baselines3 instead.

Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.

Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.

Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch/JAX/TensorFlow. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.

Transform brain dumps into polished blog posts in Nick Nisi's voice. Use when the user wants to write a blog post with scattered ideas, talking points, and conclusions that need organization into a cohesive narrative with Nick's conversational, authentic, and thoughtful tone.

Create diagrams and visualizations using Mermaid.js v11 syntax. Use when generating flowcharts, sequence diagrams, class diagrams, state diagrams, ER diagrams, Gantt charts, user journeys, timelines, architecture diagrams, or any of 24+ diagram types. Supports JavaScript API integration, CLI rendering to SVG/PNG/PDF, theming, configuration, and accessibility features. Essential for documentation, technical diagrams, project planning, system architecture, and visual communication.

Comprehensive guide for writing unit tests, integration tests, and component tests in AiderDesk using Vitest. Use when creating new tests, configuring mocks, or organizing test files.

Configure Kling AI for team and organization use. Use when setting up shared access, managing team API keys, or organizing projects. Trigger with phrases like 'klingai team', 'kling ai organization', 'klingai multi-user', 'shared klingai access'.

Create and manage custom prompt libraries for Cascade. Activate when users mention "custom prompts", "prompt library", "prompt templates", "cascade prompts", or "prompt management". Handles prompt library creation and organization. Use when working with windsurf custom prompts functionality. Trigger with phrases like "windsurf custom prompts", "windsurf prompts", "windsurf".

Execute this skill allows AI assistant to construct and configure neural network architectures using the neural-network-builder plugin. it should be used when the user requests the creation of a new neural network, modification of an existing one, or assistance... Use when appropriate context detected. Trigger with relevant phrases based on skill purpose.

Mermaid Gantt Chart Generator - Auto-activating skill for Visual Content. Triggers on: mermaid gantt chart generator, mermaid gantt chart generator Part of the Visual Content skill category.

Implement governance and policy guardrails for Sentry. Use when enforcing organizational standards, compliance rules, or standardizing Sentry usage across teams. Trigger with phrases like "sentry governance", "sentry standards", "sentry policy", "enforce sentry configuration".

Optimize deep learning models using Adam, SGD, and learning rate scheduling to improve accuracy and reduce training time. Use when asked to "optimize deep learning model" or "improve model performance". Trigger with phrases like 'optimize', 'performance', or 'speed up'.