Design

Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.

Guide Claude through omicverse's bulk RNA-seq DEG pipeline, from gene ID mapping and DESeq2 normalization to statistical testing, visualization, and pathway enrichment. Use when a user has bulk count matrices and needs differential expression analysis in omicverse.

Guide users through omicverse's spatial transcriptomics tutorials covering preprocessing, deconvolution, and downstream modelling workflows across Visium, Visium HD, Stereo-seq, and Slide-seq datasets.

Guide Claude through SCSA, MetaTiME, CellVote, CellMatch, GPTAnno, and weighted KNN transfer workflows for annotating single-cell modalities.

Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.

Transforms research findings into executive-ready briefings. Automatically activated when user mentions 'executive', 'briefing', 'C-suite', 'board', 'leadership', or 'presentation'.

Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography.

Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.

Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_single_batch.ipynb.

Expert Java developer skill for AgentScope Java framework - a reactive, message-driven multi-agent system built on Project Reactor. Use when working with reactive programming, LLM integration, agent orchestration, multi-agent systems, or when the user mentions AgentScope, ReActAgent, Mono/Flux, Project Reactor, or Java agent development. Specializes in non-blocking code, tool integration, hooks, pipelines, and production-ready agent applications.

Apply systematic performance optimization techniques for Python and Rust code: estimation + profiling, API/bulk design, algorithmic wins, cache-friendly memory layout, fewer allocations, fast paths, caching, and compiler-friendly hot loops. Use for performance code reviews, refactors, and profiling-driven optimizations. Keywords: performance, latency, throughput, cache, allocation, memory layout, PyO3, msgspec, tokio, async, pprof, py-spy, perf.

Process use when you need to work with database documentation. This skill provides automated documentation generation with comprehensive guidance and automation. Trigger with phrases like "generate docs", "document schema", or "create database documentation".

Build production-ready GraphQL servers with schema design, resolvers, and subscriptions.Use when building GraphQL APIs with schemas and resolvers.Trigger with phrases like "build GraphQL API", "create GraphQL server", or "setup GraphQL".

Validate encryption implementations and cryptographic practices. Use when reviewing data security measures. Trigger with 'check encryption', 'validate crypto', or 'review security keys'.

Use when you need to work with security and compliance.This skill provides security scanning and vulnerability detection with comprehensive guidance and automation.Trigger with phrases like "scan for vulnerabilities", "implement security controls",or "audit security".

Use when you need to work with database sharding.This skill provides horizontal sharding strategies with comprehensive guidance and automation.Trigger with phrases like "implement sharding", "shard database",or "distribute data".

Build and evaluate classification models for supervised learning tasks with labeled data. Use when requesting "build a classifier", "create classification model", or "train classifier".

Use when you need to work with deployment and CI/CD.This skill provides deployment automation and orchestration with comprehensive guidance and automation.Trigger with phrases like "deploy application", "create pipeline",or "automate deployment".

Use when you need to work with deadlock detection.This skill provides deadlock detection and resolution with comprehensive guidance and automation.Trigger with phrases like "detect deadlocks", "resolve deadlocks",or "prevent deadlocks".

Use when you need to work with backup and recovery.This skill provides backup automation and disaster recovery with comprehensive guidance and automation.Trigger with phrases like "create backups", "automate backups",or "implement disaster recovery".